Resources associated with paper: https://github.com/RemkoDuursma/baadanalysis
First we install remake.
devtools::install_github("richfitz/remake", dependencies=TRUE)We also need to install storr.
devtools::install_github("richfitz/storr", dependencies=TRUE)Because we only want to install once, we’ve set the above chunks not to evaluate once the software is installed.
We’ve downloaded the resources associated with the paper and unzipped them. The materials are located in folder ./baadanalysis-master/. Because the default behaviour of .Rmd is to set the working directory to the directory in which the .Rmd is located, we move the .Rmd the ./baadanalysis-master/ directory.
remake::install_missing_packages()Indeed, the above command didn’t install the baad.data package so we run the following code:
devtools::install_github("richfitz/datastorr")
devtools::install_github("traitecoevo/baad.data")remake::make()## [ LOAD ]## [ READ ] | # loading sources## < MAKE > all## [ OK ] baad_all## [ OK ] downloads/ian-symbol-eucalyptus-spp-1.png## [ OK ] world_mapmat## [ OK ] baad_climate1## [ OK ] baad_mapmat## [ OK ] baad_climate2## [ OK ] baad_climate3## [ OK ] dataset## [ OK ] basalafit## [ OK ] table_varpart_gam_old## [ OK ] table_varpart_gam## [ OK ] table_varpart_lmer## [ OK ] table_hierpart## [ OK ] manuscript_suppinfo.tex## [ OK ] afas## [ OK ] msas## [ OK ] table_samplesize## [ OK ] manuscript.tex## [ OK ] figures/Figure1.pdf## [ OK ] figures/Figure2.pdf## [ OK ] figures/Figure3.pdf## [ OK ] figures/Figure4.pdf## [ OK ] figures/Figure5.pdf## [ OK ] figures/Figure6.pdf## [ OK ] manuscript.pdf## [ OK ] figures/FigureS1.pdf## [ OK ] figures/FigureS2.pdf## [ OK ] figures/FigureS3.pdf## [ OK ] figures/FigureS4.pdf## [ OK ] figures/FigureS5.pdf## [ OK ] manuscript_suppinfo.pdf## [ ----- ] allLinks to the materials created: